New features include:
- Population based modelling (nlme plug-in):
- Special graphic notation
- Automated Java and R code generation
- Integration with R nlme package for solving non-linear mixed effect models
- Optimized Java code generator for huge models (10 000+ species and 10 000+ reactions)
- Gurobi solver for fbc analyses (need to separately install Gurobi Optimizer)
- Started simulations are shown in "Tasks" tab
- Visualisation of dependency edges - these edges link equations and used there variables
- Visualisation of glycan structures on the base their structure
- Possibility to hide elements on a diagram ("visible" node property)
- Analyses "ShareComplexMolecules" makes clones for substances involved into many reactions
- New actions on toolbar to align and distribute selected nodes (top, bottom, etc.)
- BioNetGen plugin improvements:
- Importer/Exporter for .bngl files
- Support for Molecule Types
- Built-in functions
- Highlight selected diagram element in corresponding BioNetGen code