Release of BioUML platform - 2019.4
Posted: 27 Dec 2019, 11:01New 2019.4 version was released and can be downloaded from new.bio-store.org.
New features and improvements:
New features and improvements:
- General:
- Headless version of BioUML refined and improved. More information and example scripts can be found here.
- All Curated Biomodels tested to be imported and simulated
- Automatically select imported data element in repository tree
- Headless version of BioUML refined and improved. More information and example scripts can be found here.
- Formats:
- SBGN Process Description Level 1 version 2.0 supported: shapes of simple chemical and variable changed, equivalence operator implemented (not affecting simulation for now)
- Better Reactome support (full support of new ID format, various fixes)
- Option to use score satisfying UCSC Ņonventions during export in BED, GTF, GFF
- SBGN Process Description Level 1 version 2.0 supported: shapes of simple chemical and variable changed, equivalence operator implemented (not affecting simulation for now)
- Tables:
- Table importer: fixed quotes processing, better processing of incomplete lines (with empty trailing values)
- Info about matching path is shown in the results of the table converting (with versions of used databases).
- Table importer: fixed quotes processing, better processing of incomplete lines (with empty trailing values)
- Web version:
- More precise edge selection in diagrams
- Selected edges are highlighted with pink color
- Move nodes on diagram using Ctrl+Arrow keys for 1px and Shift + Arrow keys for 5px shift
- Copy and clone diagram element actions are separated
- Initial integration with Jupyter
- Track finder (user can set conditions and search for tracks in database (Ensembl, GTRD), the results can be added to the genome browser view from the tab)
- More precise edge selection in diagrams
- Bug fixing