Release of BioUML platform - 2020.4
Posted: 28 Dec 2020, 15:23New 2020.4 version was released and can be downloaded from bio-store.org.
New features and improvements
New features and improvements
- Simulation:
- New simulation document allowing user to vary model parameters and immediately observe changes in simulation results.
- Diagrams:
- Reaction creation dialog is more compact with a separate tab for reaction law editing.
- Export\Import enhanced. Now models can be exported along with all its submodels and related data tables in one archive.
- New tab to edit variables.
- Species can be renamed.
- Nodes movement improved.
- Initial variable values can be set to diagrams from external tables (e.g. parameter fitting result).
- Parameter fitting
- Optimization can use table data (e.g. result of another parameter fitting) as a starting point.
- During parameter fitting intermediate results (a table with the current best fitted parameter values) can be saved without stopping the process.
- Results of parameter fitting can be saved as autogenerated plot.
- Web
- Improved integration with Jupyter.
- Default project can be set.
- Variables to plot during model simulation can be edited through more convenient dialog.
- Complex can be more easily selected with all its elements by double click.
- New tab to work with Flux Balance Analysis.