Release of BioUML platform - 2019.4

Announcements about new releases and other events related with BioUML platform

Release of BioUML platform - 2019.4

Postby Ilya Kiselev » 27 Dec 2019, 11:01

New 2019.4 version was released and can be downloaded from new.bio-store.org.

New features and improvements:

  • General:
    • Headless version of BioUML refined and improved. More information and example scripts can be found here.
    • All Curated Biomodels tested to be imported and simulated
    • Automatically select imported data element in repository tree
  • Formats:
    • SBGN Process Description Level 1 version 2.0 supported: shapes of simple chemical and variable changed, equivalence operator implemented (not affecting simulation for now)
    • Better Reactome support (full support of new ID format, various fixes)
    • Option to use score satisfying UCSC сonventions during export in BED, GTF, GFF
  • Tables:
    • Table importer: fixed quotes processing, better processing of incomplete lines (with empty trailing values)
    • Info about matching path is shown in the results of the table converting (with versions of used databases).
  • Web version:
    • More precise edge selection in diagrams
    • Selected edges are highlighted with pink color
    • Move nodes on diagram using Ctrl+Arrow keys for 1px and Shift + Arrow keys for 5px shift
    • Copy and clone diagram element actions are separated
    • Initial integration with Jupyter
    • Track finder (user can set conditions and search for tracks in database (Ensembl, GTRD), the results can be added to the genome browser view from the tab)
  • Bug fixing
Ilya Kiselev
 
Posts: 6
Joined: 03 Dec 2014, 20:16

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